A list of publications from previous students participating in the undergraduate research program. Student authors are denoted with an asterisk (*).
Note: In addition to the published papers and book chapters on this list, we have numerous other manuscripts in preparation.
Chance B, Wong J*, Tintle NL. “Student performance in curricula centered on simulation-based inference: a preliminary report. Journal of Statistics Education. Submitted May 2016. Accepted July 2016.
Beck A*, Luedtke A*, Liu K*, Tintle NL. “A powerful method for including genotype uncertainty in tests of Hardy-Weinberg Equilibrium” Pacific Symposium on Biocomputing. Accepted September 2016.
Dunn SL, Dunn LM, Buursma M*, Clark J, Vander Berg L*, DeVon HA, Tintle NL. “Home and Hospital-based cardiac rehabilitation exercise: the important role of physician recommendation” Western journal of nursing research. Submitted June 2016. Accepted July 2016. Best journal article of 2016 award winner.
Disselkoen C*, Greco B*, Cook K*, Koch K*, Lerebours R*, Viss C*, Cape J*, Held E*, Ashenafi Y*, Fischer K*, Acosta A*, Cunningham M*, Best AA, DeJongh M, Tintle NL. “A Bayesian framework for the inference of microbial gene activity states” Frontiers in Microbiology. July 2016. http://journal.frontiersin.org/article/10.3389/fmicb.2016.01191/full
Bowerman N*, Tintle NL, DeJongh M, Best AA “Identification and analysis of bacterial genomic metabolic signatures” Pacific Symposium on Biocomputing. Accepted September 2016.
Kamp T*, Adams M*, Disselkoen C*, Tintle NL “Improved performance of gene set analysis on genome-wide transcriptomics data when using gene activity state estimates” Pacific Symposium on Biocomputing. Accepted September 2016.
Greco B*, Hainline A*, Arbet J*, Grinde K*, Benitez A* and Tintle NL. (2016) “A general approach for combining diverse rare variant association tests provides improved robustness across a wider range of genetic architecture” European Journal of Human Genetics. 24:774-778. European Journal of Human Genetics
Konig I, Auerbach J, Deng Q, Gola D, Held E*, Holzinger E, Legault M, Sun R, Tintle NL and Yang H. “Machine learning and data mining in complex genetic data- a review on the lessons learned in Genetic Analysis Workshop 19” Accepted. To appear. BMC Genetics. Vol 17(Suppl 2):1 http://bmcgenet.biomedcentral.com/articles/10.1186/s12863-015-0315-8
Friedberg F, Tintle NL, Clark J*, Bromet EJ. (2015) “Prolonged fatigue in Ukraine and the United States: Prevalence and risk factors. Fatigue Biomedicine, Health and Behavior. 33(1):33-46. http://www.tandfonline.com/doi/full/10.1080/21641846.2014.993829
Dunn S, Dunn LM, Rieth NP, Olamijulo GB, Swierenga LL, Holden TP, Clark JA*, DeVon HA and Tintle NL. “The impact of home- and hospital-based cardiac rehabilitation exercise on hopelessness in patients with coronary heart disease” Journal of Cardiopulmonary Rehabilitation and Prevention. Accepted May 2015. In press.
Held E*, Cape J* and Tintle NL. “Comparing machine learning and logistic regression methods for predicting hypertension using a combination of gene expression and next-generation sequencing data” (2015) BMC Proceedings for Genetic Analysis Workshop 19, Vienna, Austria. 9 Suppl 8:S14.
Powers S*, De Jongh M, Best A, Tintle NL (2015) “Cautions about the reliability of pairwise gene correlations based on expression data.” Frontiers in Microbiology. 6:650. http://dx.doi.org/10.3389/fmicb.2015.00650
Tintle NL, Pottala JV, Lacey S, Ramachandran V, Westra J*, Rogers A*, Clark J*, Olthoff B*, Larson M, Harris W, Shearer G. “A genome wide association study of fourteen red blood cell fatty acids in the Framingham Heart Study” (2015) Prostoglandins, Leukotrienes and Essential Fatty Acids. 94:65-72. http://digitalcollections.dordt.edu/faculty_work/109/
Valcarcel A*, Grinde K*, Cook K*, Green A*, Tintle NL. “A multi-step approach to SNP-set analysis: An evaluation of power and type I error of gene-based tests of association after pathway-based association tests” (2015) BMC Proceedings for Genetic Analysis Workshop 19, Vienna, Austria. 9 Suppl 8:S49.
Green A*, Cook K*, Grinde K*, Valcarcel A*, Tintle NL. “A general method for combining different family-based rare variant tests of association to improve power and robustness to a wide range of genetic architectures” (2015) BMC Proceedings for Genetic Analysis Workshop 19, Vienna, Austria. 9 Suppl 8:S18.
Dunn S, Olamijulo G*, Fuglseth H*, Holden T, Swierenga L*, Sit M*, Rieth N*, Tintle NL. (2014) “The State-Trait Hopelessness Scale: Development and Testing. Western Journal of Nursing Research. 36(4). http://digitalcommons.hope.edu/faculty_publications/1221/
Tintle NL, Rogers A*, Chance B, Cobb G, Rossman A, Roy S, Swanson T, VanderStoep J (2014). “Quantitative evidence for the use of simulation and randomization in the introductory statistics course” Proceedings of the ninth International Conference on Teaching Statistics. Flagstaff, Arizona. http://iase-web.org/icots/9/proceedings/pdfs/ICOTS9_8A3_TINTLE.pdf
Hainline A*, Alvarez C*, Luedtke A*, Greco B*, Beck A*, Tintle NL “Evaluation of the power and type I error of recently proposed family-based tests of association for rare variants” BMC Proceedings. 8(Suppl 2):S36. http://www.biomedcentral.com/1753-6561/8/S1/S36
Rogers A*, Beck A*, Tintle NL “Evaluating the concordance between sequencing, imputation and microarray genotype calls in the GAW18 data” BMC Proceedings. 8(Suppl 2):S20.
Greco B*, Luedtke A*, Hainline A*, Alvarez C*, Beck A* and Tintle NL “Application of family-based tests of association for rare variants to pathways” BMC Proceedings. 8(Suppl 2):S105.
Cook K*, Benitez A*, Fu C*, Tintle NL “Evaluating the impact of genotype errors on rare variant tests of association” Frontiers in Statistical Genetics and Methodology. April 2014. journal.frontiersin.org/Journal/10.3389/fgene.2014.00062/abstract
Petersen A*, Spratt J*, Tintle NL “Incorporating prior evidence into tests of genetic association” Chapter in Genome-Wide Association Studies. Ed. Cedric Gondro, Julius van der Werf and Ben Hayes. Springer, Methods in Molecular Biology series. 2013.
Liu K*, Fast S*, Zawistowski M, Tintle NL “A geometric framework for the evaluation of rare variant tests of association” Genetic Epidemiology. 37(4): 345-357.
Mayer-Jochimsen M*, Fast S*, Tintle NL “Assessing the impact of differential genotyping errors on rare variant tests of association” PLoS One. March 5, 2013. http://www.plosone.org/article/info:doi/10.1371/journal.pone.0056626
Petersen A*, Alvarez C*, DeClaire S*, Tintle NL “Assessing methods for assigning SNPs to genes in gene-based tests of association using common variants. PLoS One. May 31, 2013. dx.plos.org/10.1371/journal.pone.0062161
Liu K*, Luedtke A*, Tintle NL “Optimal methods for using posterior probabilities in association testing” Human Heredity. 75(1):2-11.
Hainline A*, Alvarez C*, Luedtke A*, Greco B*, Beck A*, Tintle NL. "Evaluation of the power and type I error of recently proposed family-based tests of association for rare variants. BMC Proceedings. To appear.
Rogers A*, Beck A*, Tintle NL "Evaluating the concordance between sequencing, imputation and microarray genotype calls in GAW18 data." BMC Proceedings. To appear.
Greco B*, Luedtke A*, Hainline A*, Alvarez C*, Beck A* and Tintle NL "Application of family-based tests of association for rare variants to pathways. BMC Proceedings. To appear.
Powers S*, DeJongh M, Best AA, Tintle NL "Are computations of pairwise gene associations from expression data reliable?" BMC Bioinformatics. In revision. June 2013.
Tintle NL, Sitarik A*, Boerema B*, Young K*, Best AA, DeJongh M (2012) "Evaluating the consistency of gene sets used in the analysis of bacterial gene expression data" BMC Bioinformatics. 13:193. www.biomedcentral.com/1471-2105/13/193
Bekmetjev A, VanBruggen D*, McLellan B*, DeWinkle B*, Lunderberg E*, Tintle NL (2012) "The cost-effectiveness of reclassification sampling for prevalence estimation" PLoS One. 7(2):e32058.
Powers S* and Tintle NL. (2011) "Assessing the impact of non-differential genotyping errors on rare variant tests of association" Human Heredity. 72(3):152-159.
Tintle NL, Bacon B*, Gutkovich Z, Bromet EJ. "Risk factors and correlates for depression in elderly Ukrainians" International Journal of Geriatric Psychiatry. Epub. January 2011.
Petersen A*, Sitarik A*, Luedtke A*, Powers S*, Bekmetjev A, Tintle NL "Evaluating methods for combining rare variant data in pathway-based tests of genetic association" BMC Proceedings, Volume 5, Supplement 9, 2011. In Press.
Luedtke A*, Powers S*, Petersen A*, Sitarik A*, Bekmetjev A, Tintle NL "Evaluating Methods for the Analysis of Rare Variants in Sequence Data." BMC Proceedings, Volume 5, Supplement 9, 2011. In Press.
Tintle, N.L., Gordon D., Van Bruggen D.*, Finch, S.J. (2009) "The cost effectiveness of duplicate genotyping for testing genetic association." Annals of Human Genetics. 73, 370-378.
Borchers, B.*, Brown, M.*, McLellan, B.*, Bekmetjev, A., Tintle, N.L. (2009) "Incorporating duplicate genotype data into linear trend tests of genetic association: methods and cost-effectiveness" Statistical Applications in Genetics and Molecular Biology. 8(1):24. www.bepress.com/sagmb/vol8/iss1/art24
Tintle, N.L., Best A.A., De Jongh M., Van Bruggen, D.*, Heffron F., Porwollik S., Taylor R.C. (2008) “Gene set analyses for interpreting microarray experiments on prokaryotic organisms.” BMC Bioinformatics. 9:469. www.biomedcentral.com/1471-2105/9/469